Wassim Gabriel

Adams, Charlotte; Gabriel, Wassim; Laukens, Kris; Picciani, Mario; Wilhelm, Mathias; Bittremieux, Wout; Boonen, Kurt: Fragment ion intensity prediction improves the identification rate of non-tryptic peptides in timsTOF. Nature Communications 15 (1), 2024 more…
Gabriel, Wassim; Picciani, Mario; The, Matthew; Wilhelm, Mathias: Deep Learning-Assisted Analysis of Immunopeptidomics Data. In: Methods in Molecular Biology. Springer US, 2024 more…
The, Matthew; Picciani, Mario; Jensen, Cecilia; Gabriel, Wassim; Kuster, Bernhard; Wilhelm, Mathias: AI-Assisted Processing Pipeline to Boost Protein Isoform Detection. In: Methods in Molecular Biology. Springer US, 2024 more…

McGann, Chris D.; Barshop, William D.; Canterbury, Jesse D.; Lin, Chuwei; Gabriel, Wassim; Huang, Jingjing; Bergen, David; Zabrouskov, Vlad; Melani, Rafael D.; Wilhelm, Mathias; McAlister, Graeme C.; Schweppe, Devin K.: Real-Time Spectral Library Matching for Sample Multiplexed Quantitative Proteomics. Journal of Proteome Research 22 (9), 2023, 2836-2846 more…
Picciani, Mario; Gabriel, Wassim; Giurcoiu, Victor‐George; Shouman, Omar; Hamood, Firas; Lautenbacher, Ludwig; Jensen, Cecilia Bang; Müller, Julian; Kalhor, Mostafa; Soleymaniniya, Armin; Kuster, Bernhard; The, Matthew; Wilhelm, Mathias: Oktoberfest: Open‐source spectral library generation and rescoring pipeline based on Prosit. PROTEOMICS 24 (8), 2023 more…

Ekvall, Markus; Truong, Patrick; Gabriel, Wassim; Wilhelm, Mathias; Käll, Lukas: Prosit Transformer: A transformer for Prediction of MS2 Spectrum Intensities. Journal of Proteome Research 21 (5), 2022, 1359-1364 more…
Gabriel, Wassim; Giurcoiu, Victor; Lautenbacher, Ludwig; Wilhelm, Mathias: Predicting fragment intensities and retention time of iTRAQ‐ and TMTPro‐labeled peptides with Prosit‐TMT. PROTEOMICS, 2022, 2100257 more…
Gabriel, Wassim; The, Matthew; Zolg, Daniel P.; Bayer, Florian P.; Shouman, Omar; Lautenbacher, Ludwig; Schnatbaum, Karsten; Zerweck, Johannes; Knaute, Tobias; Delanghe, Bernard; Huhmer, Andreas; Wenschuh, Holger; Reimer, Ulf; Médard, Guillaume; Kuster, Bernhard; Wilhelm, Mathias: Prosit-TMT: Deep Learning Boosts Identification of TMT-Labeled Peptides. Analytical Chemistry, 2022 more…
Shouman, Omar; Gabriel, Wassim; Giurcoiu, Victor-George; Sternlicht, Vitor; Wilhelm, Mathias: PROSPECT: Labeled Tandem Mass Spectrometry Dataset for Machine Learning in Proteomics. Advances in Neural Information Processing Systems, Curran Associates, Inc., 2022 more…
Zecha, Jana; Gabriel, Wassim; Spallek, Ria; Chang, Yun-Chien; Mergner, Julia; Wilhelm, Mathias; Bassermann, Florian; Kuster, Bernhard: Linking post-translational modifications and protein turnover by site-resolved protein turnover profiling. Nature Communications 13 (1), 2022 more…

Publications