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Technische Universität München

Publications

2025

  1. Krasenbrink J, Hanson BT, Weiss AS, Borusak S, Tanabe TS, Lang M, Aichinger G, Hausmann B, Berry D, Richter A, Marko D,  Mussmann M,  Schleheck D, Stecher B, Loy A. Sulfoquinovose is differently degraded by the mouse and human gut microbiota and not metabolized by the host. bioRxiv. 2025 Jan 22:2025-01. DOI: 10.1101/2025.01.22.634256

  2. Jordi SB, Li J, Bartschi I, Wyss J, Stecher B, Sauer U, Macphersonl AJ, Yilmaz B, Misselwitz B, Metabolic dynamics of the small intestinal microbiota upon nutritional interventions. InSWISS MEDICAL WEEKLY 2024 Sep 9 (Vol. 154, pp. 29S-29S). Tragerverein Swiss Medical Weekly, Malzgasse 15, Basel, SWITZERLAND: SMW supporting association. DOI:10.1093/ecco-jcc/jjae190.1499

2024

  1. Urbauer E, Aguanno D, Mindermann N, Omer H, Metwaly A, Krammel T, Faro T, Remke M, Reitmeier S, Bärthel S, Kersting J…., Stecher B,  Allez M, Rath E, …, Haller D. Mitochondrial perturbation in the intestine causes microbiota-dependent injury and gene signatures discriminative of inflammatory disease. Cell Host & Microbe. 2024 Aug 14;32(8):1347-64. DOI: 10.1016/j.chom.2024.06.013.

  2. Woelfel S, Silva MS, Stecher B. Intestinal colonization resistance in the context of environmental, host, and microbial determinants. Cell host & microbe. 2024 Jun 12;32(6):820-36. DOI: 10.1016/j.chom.2024.05.002 

  3. Beutler M, Eberl C, Garzetti D, Herp S, Münch P, Ring D, Dolowschiak T, Brugiroux S, Schiller P, Hussain S, Basic M, Stecher B. Contribution of bacterial and host factors to pathogen “blooming” in a gnotobiotic mouse model for Salmonella enterica serovar Typhimurium-induced enterocolitis. Infection and Immunity. 2024 Feb 13;92(2):e00318-23. DOI: 10.1128/iai.00318-23

2023

  1. Coleman OI, Sorbie A, Riva A, von Stern M, Kuhls S, Selegato DM, Köhler N, Wirbel J, Kacprowski T, Dunkel A, Pauling JK….,….Stecher B, … Haller D. ATF6 activation alters colonic lipid metabolism causing tumor-associated microbial adaptation. bioRxiv. 2023 DOI: 10.1101/2023.11.03.565267

  2. Ye H, Borusak S, Eberl C, Krasenbrink J, Weiss AS, Chen SC, Hanson BT, Hausmann B, Herbold CW, Pristner M, Zwirzitz B,…Stecher B.. Ecophysiology and interactions of a taurine-respiring bacterium in the mouse gut. Nature Communications. 2023 Sep 18;14(1):5533.: DOI: 10.1038/s41467-023-41008-z

  3. von Strempel A, Weiss AS, Wittmann J, Salvado Silva M, Ring D, Wortmann E, Clavel T, Debarbieux L, Kleigrewe K, Stecher B. Bacteriophages targeting protective commensals impair resistance against Salmonella Typhimurium infection in gnotobiotic mice. PLoS Pathogens. 2023 Aug 21;19(8):e1011600. DOI: 10.1371/journal.ppat.1011600

  4. Weiss AS, Niedermeier LS, von Strempel A, Burrichter AG, Ring D, Meng C, Kleigrewe K, Lincetto C, Hübner J, Stecher B. Nutritional and host environments determine community ecology and keystone species in a synthetic gut bacterial community. Nature Communications. 2023 Aug 8;14(1):4780.  Nature Communications 14 (1), 4780, 2023. DOI:10.1038/s41467-023-40372-0

  5. Münch PC, Eberl C, Woelfel S, Ring D, Fritz A, Herp S, Lade I, Geffers R, Franzosa EA, Huttenhower C, McHardy AC…, Stecher B. Pulsed antibiotic treatments of gnotobiotic mice manifest in complex bacterial community dynamics and resistance effects. Cell Host & Microbe. 2023 Jun 14;31(6):1007-20. DOI: 10.1016/j.chom.2023.05.013

  6. Lamy-Besnier Q, Bignaud A, Garneau JR, Titecat M, Conti DE, Von Strempel A, Monot M, Stecher B, Koszul R, Debarbieux L, Marbouty M. Chromosome folding and prophage activation reveal specific genomic architecture for intestinal bacteria. Microbiome. 2023 May 19;11(1):111.DOI: 10.1186/s40168-023-01541-x

  7. C Lettl, F Schindele, AR Mehdipour, T Steiner, D Ring, R Brack-Werner, B Stecher, W Eisenreich, U Bilitewski… Selective killing of the human gastric pathogen Helicobacter pylori by mitochondrial respiratory complex I inhibitors  Cell Chemical Biology 30 (5), 499-512. e5, 2023 DOI: 10.1016/j.chembiol.2023.04.003

  8. Weiss AS., Burrichter AG,. & Stecher, B. Das Oligo-MM-Modell in der Darmmikrobiomforschung. Biospektrum 29, 18–21 (2023). DOI: 10.1007/s12268-023-1875-1

2022

  1. M Rokavec, K Lutz, Y Schäfer, S Krebs, E Winheim, V Friedrich, D Matzek, R Öllinger, R Rad, B Stecher. CCL17 promotes colitis-associated tumorigenesis dependent on the microbiota, The Journal of Immunology 209 (11), 2227-2238, 2022. doi: 10.4049/jimmunol.2100867

  2. B Abt, A Bleich, R Tolba, LM Blank, WW Navarre, F Kiessling, HP Horz, N Torow, V Cerovic, B Stecher…  Enhanced cultured diversity of the mouse gut microbiota enables custom-made synthetic communities. Cell host & microbe 30 (11), 1630-1645. e25, 2022 . DOI: 10.1016/j.chom.2022.09.011

  3. H Ye, S Borusak, C Eberl, BT Hanson, B Zwirzitz, CW Herbold, P Pjevac, B Hausmann, B Stecher, D Schleheck… A novel taurine-respiring murine gut bacterium contributes to colonization resistance against enteropathogens bioRxiv, 2022.10. 05.510937, 2022. DOI: 10.1101/2022.10.05.510937

  4. M Arnoldini, TD Challa, M Klug, A Kellenberger, S Nowok, E Faccin, AJ Macpherson, B Stecher… Metabolic reconstitution of germ-free mice by a gnotobiotic microbiota varies over the circadian cycle…, PLoS biology 20 (9), e3001743, 2022. DOI: 10.1371/journal.pbio.3001743

  5. S Brugiroux, D Berry, D Ring, N Barnich, H Daims, B Stecher. Specific Localization and Quantification of the Oligo‐Mouse‐Microbiota (OMM12) by Fluorescence In Situ Hybridization (FISH)  Current protocols 2 (9), e548, 2022. DOI: 10.1002/cpz1.548

  6. S Paulini, FD Fabiani, AS Weiss, AL Moldoveanu, S Helaine, B Stecher, K Jung. The biological significance of pyruvate sensing and uptake in Salmonella enterica Serovar typhimurium Microorganisms 10 (9), 1751, 2022. DOI: 10.3390/microorganisms10091751

  7. T Cernava, D Rybakova, F Buscot, T Clavel, AC McHardy, F Meyer, F Meyer, J Overmann, B Stecher. Metadata harmonization–Standards are the key for a better usage of omics data for integrative microbiome analysis.  Environmental Microbiome 17 (1), 33, 2022. DOI: 10.1186/s40793-022-00425-1

  8. Q Lamy-Besnier, A Bignaud, JR Garneau, M Titecat, D Conti, A Von Strempel, M Monot, B Stecher, R Koszul. Chromosome folding and prophage activation reveal gut-specific genome dynamics of bacteria in the OMM12 consortium. bioRxiv, 2022.05. 18.492453, 2022. DOI: 10.1186/s40168-023-01541-x

  9. Paulini S, Fabiani FD, Weiß AS, Moldoveanu AL, Helaine S, Stecher B, Jung K. Identification of two pyruvate transporters in Salmonella enterica serovar Typhimurium and their biological relevance, bioRxiv, 2022.05. 13.491600, 2022 DOI: 10.1101/2022.05.13.491600

  10. Weiss AS, Burrichter AG, Durai Raj AC, von Strempel A, Meng C, Kleigrewe K, Münch PC, Rössler L, Huber C, Eisenreich W, Jochum LM,… Stecher B. In vitro interaction network of a synthetic gut bacterial community. In vitro interaction network of a synthetic gut bacterial community, The ISME journal 16 (4), 1095-1109, 2022. DOI: 10.1038/s41396-021-01153-z

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